Bioconductor Alternative splicing

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2.7k

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sgseq splicing alternative splicing

updated 8.2 years ago by Leonard Goldstein ▴ 200 • written 8.2 years ago by vakul.mohanty ▴ 20

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2.2k

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DEXSeq DESeq2 dexseq deseq2 alternative splicing

8.6 years ago Fahmi Nazarie • 0

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1.9k

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dexseq alternative splicing exon skipping

updated 9.2 years ago by Simon Anders ★ 3.7k • written 9.2 years ago by ebadr • 0

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1.5k

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rna-seq alternative splicing SGSeq

5.5 years ago andrea.bast • 0

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1.3k

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limma rna-seq alternative splicing

updated 6.6 years ago by Gordon Smyth 50k • written 6.6 years ago by lirongrossmann ▴ 80

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1.2k

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maser R rMATs alternative splicing

5.7 years ago Reza • 0

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1.2k

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limma voom alternative splicing

8.2 years ago osa.zuta ▴ 40

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1.1k

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deseq2 dexseq alternative splicing

updated 8.4 years ago by Michael Love 42k • written 8.5 years ago by sahiilseth • 0

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1.0k

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aspli readCounts rna-seq alternative splicing AS

5.2 years ago fernandalpcosta ▴ 10

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947

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rnaseq alternative splicing ASpli

5.4 years ago nicolas.guyon2 • 0

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898

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R alternative splicing ASpli AsDiscover

5.4 years ago abdul rawoof ▴ 60

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888

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sgseq alternative splicing rna seq

updated 4.4 years ago by Leonard Goldstein ▴ 200 • written 4.4 years ago by 116100016 • 0

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782

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rna seq SGSeq Alternative splicing

updated 4.6 years ago by Leonard Goldstein ▴ 200 • written 4.6 years ago by 116100016 • 0

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690

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.6 years ago noahhelton98 ▴ 20

14 results • Page 1 of 1

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Answer: error in limma , contrast.matrix Number of rows of contrast matrix must match nu by James W. MacDonald 65k

I doubt you have that many contrasts. I think that is probably the number of rows. What does `dim(fit)` return (and `head(fit$coef)`)?

Answer: Extremely small p-values using Limma for proteomic data by James W. MacDonald 65k

If you fit a cell means model (without an intercept), you will have to construct contrasts using `makeContrasts` and fit them using `contra…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks a lot Peter, We solved the problem, IT had implemented a policy of RAM usage that started a conflict with any RAM-hungry process, m…

Answer: meffil.snp.concordance by James W. MacDonald 65k

This support site is meant to help people with technical questions about Bioconductor packages. The `meffil` package is not Bioconductor, n…

Answer: minfi latest update for EPIC V2 chip by James W. MacDonald 65k

Zuguang Gu submitted both of those packages as part of the current release, and I submitted a PR for `minfi` so it will now distinguish the…

Votes

Answer: How to save the DEXSeq results

Answer: minfi support of illumina Infinium methylationEPIC v2.0

Comment: minfi support of illumina Infinium methylationEPIC v2.0

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

Comment: Help with running egsea()

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